Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ytxh domain-containing protein | DWX04_04490 | Not Available | Negative | 1099955 - 1100152 | 6773.24 |
| spor domain-containing protein | DWX04_04495 | Not Available | Positive | 1100363 - 1100860 | 17961.2 |
| glycoside hydrolase xylanase | DWX04_04500 | Not Available | Positive | 1100986 - 1101945 | 35416.5 |
| ompa family protein | DWX04_04505 | Not Available | Negative | 1102278 - 1103351 | 38606.7 |
| duf3869 domain-containing protein | DWX04_04510 | Not Available | Negative | 1103407 - 1104294 | 31146.5 |
| hypothetical protein | DWX04_04515 | Not Available | Negative | 1104305 - 1105543 | 47727.3 |
| holliday junction resolvase ruvx | DWX04_04520 | Not Available | Positive | 1105749 - 1106168 | 15859.5 |
| peptide deformylase | DWX04_04525 | Not Available | Positive | 1106192 - 1106746 | 21020.7 |
| tetratricopeptide repeat protein | DWX04_04530 | Not Available | Positive | 1106819 - 1108828 | 77336.4 |
| threonine--trna ligase | DWX04_04535 | Not Available | Positive | 1108909 - 1110849 | 74203.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

