Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | DWX04_04435 | Not Available | Negative | 1083841 - 1084686 | 32459.7 |
| efflux rnd transporter periplasmic adaptor subunit | DWX04_04440 | Not Available | Positive | 1084850 - 1085905 | 38693.3 |
| acrb/acrd/acrf family protein | DWX04_04445 | Not Available | Positive | 1085924 - 1088971 | 112605.0 |
| tolc family protein | DWX04_04450 | Not Available | Positive | 1088971 - 1090263 | 48422.8 |
| hypothetical protein | DWX04_04455 | Not Available | Positive | 1090412 - 1091599 | 45371.2 |
| duf1705 domain-containing protein | DWX04_04460 | Not Available | Positive | 1091586 - 1093292 | 64929.2 |
| d-xylose transporter xyle | DWX04_04465 | Not Available | Positive | 1093343 - 1094782 | 52816.6 |
| peptidase s41 | DWX04_04475 | Not Available | Negative | 1095968 - 1099222 | 122707.0 |
| hypothetical protein | DWX04_04480 | Not Available | Negative | 1099252 - 1099518 | 10057.5 |
| phage holin family protein | DWX04_04485 | Not Available | Negative | 1099521 - 1099877 | 13343.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

