Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease e/g | DWX04_04335 | Not Available | Negative | 1062432 - 1064006 | 59689.8 |
| integration host factor subunit beta | DWX04_04340 | Not Available | Negative | 1064245 - 1064520 | 10172.4 |
| a/g-specific adenine glycosylase | DWX04_04345 | Not Available | Positive | 1064700 - 1065758 | 40513.6 |
| single-stranded dna-binding protein | DWX04_04350 | Not Available | Positive | 1065773 - 1066240 | 17317.4 |
| gliding motility-associated protein glde | DWX04_04355 | Not Available | Positive | 1066277 - 1067629 | 50857.5 |
| siderophore biosynthesis protein | DWX04_04360 | Not Available | Positive | 1067638 - 1068264 | 24528.3 |
| two-component sensor histidine kinase | DWX04_04365 | Not Available | Negative | 1068736 - 1070517 | 68726.7 |
| dna-binding response regulator | DWX04_04370 | Not Available | Negative | 1070536 - 1071225 | 26217.9 |
| type i asparaginase | DWX04_04375 | Not Available | Negative | 1071422 - 1072465 | 38700.6 |
| tryptophan synthase subunit alpha | DWX04_04380 | Not Available | Negative | 1072690 - 1073466 | 28989.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

