Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | DWX04_04180 | Not Available | Positive | 1025363 - 1026241 | 34321.7 |
| tigr02757 family protein | DWX04_04185 | Not Available | Positive | 1026307 - 1027071 | 29908.7 |
| glucosamine-6-phosphate deaminase | DWX04_04190 | Not Available | Negative | 1027247 - 1029235 | 74771.3 |
| glucosamine-6-phosphate deaminase | DWX04_04195 | Not Available | Negative | 1029239 - 1030030 | 29021.6 |
| mfs transporter | DWX04_04200 | Not Available | Negative | 1030076 - 1031311 | 44685.5 |
| n-acylglucosamine 2-epimerase | DWX04_04205 | Not Available | Negative | 1031330 - 1032526 | 46186.1 |
| n-acetylneuraminate lyase | DWX04_04210 | Not Available | Negative | 1032539 - 1033453 | 33926.9 |
| rok family transcriptional regulator | DWX04_04215 | Not Available | Positive | 1033759 - 1034964 | 44586.1 |
| sigma-70 family rna polymerase sigma factor | DWX04_04220 | Not Available | Positive | 1035077 - 1035712 | 24920.2 |
| duf4974 domain-containing protein | DWX04_04225 | Not Available | Positive | 1035925 - 1037007 | 41095.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

