Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxypeptidase-like regulatory domain-containing protein | DWX04_04125 | Not Available | Positive | 1011972 - 1014632 | 102482.0 |
| abc transporter atp-binding protein | DWX04_04130 | Not Available | Negative | 1014689 - 1015366 | 25542.1 |
| hypothetical protein | DWX04_04135 | Not Available | Negative | 1015363 - 1016292 | 35529.3 |
| hypothetical protein | DWX04_04140 | Not Available | Negative | 1016369 - 1016947 | 23004.1 |
| sigma-70 family rna polymerase sigma factor | DWX04_04145 | Not Available | Negative | 1016960 - 1017433 | 19000.9 |
| hypothetical protein | DWX04_04150 | Not Available | Negative | 1017586 - 1018257 | 25614.6 |
| hypothetical protein | DWX04_04155 | Not Available | Positive | 1018577 - 1018696 | 4138.87 |
| tolc family protein | DWX04_04165 | Not Available | Negative | 1019581 - 1020960 | 51441.9 |
| acrb/acrd/acrf family protein | DWX04_04170 | Not Available | Negative | 1020993 - 1024118 | 115913.0 |
| efflux rnd transporter periplasmic adaptor subunit | DWX04_04175 | Not Available | Negative | 1024118 - 1025185 | 39305.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

