Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lps-assembly protein lptd | DWX04_04025 | Not Available | Positive | 977754 - 980489 | 103867.0 |
| uracil-dna glycosylase | DWX04_04030 | Not Available | Negative | 980566 - 981228 | 24957.5 |
| aspartate--ammonia ligase | DWX04_04035 | Not Available | Negative | 981346 - 982386 | 39798.2 |
| Trna-arg | Not Available | Not Available | Positive | 982589 - 982663 | Not Available |
| tonb-dependent receptor | DWX04_04045 | Not Available | Positive | 982972 - 986247 | 121699.0 |
| susd family outer membrane lipoprotein nanu | DWX04_04050 | Not Available | Positive | 986267 - 987769 | 56986.5 |
| sialidase | DWX04_04055 | Not Available | Positive | 987902 - 989542 | 60315.2 |
| beta-n-acetylhexosaminidase | DWX04_04060 | Not Available | Positive | 989546 - 991552 | 77065.5 |
| sialate o-acetylesterase | DWX04_04065 | Not Available | Positive | 991554 - 992219 | 25159.8 |
| sialate o-acetylesterase | DWX04_04070 | Not Available | Positive | 992216 - 994279 | 77619.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

