Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| porin family protein | DWX04_03770 | Not Available | Positive | 920826 - 922121 | 48112.6 |
| ribulose-phosphate 3-epimerase | DWX04_03775 | Not Available | Positive | 922197 - 922850 | 23941.4 |
| comec family competence protein | DWX04_03780 | Not Available | Positive | 922897 - 924816 | 72678.7 |
| bifunctional oligoribonuclease/pap phosphatase nrna | DWX04_03785 | Not Available | Positive | 924866 - 925906 | 39348.3 |
| duf4827 domain-containing protein | DWX04_03790 | Not Available | Positive | 925989 - 926624 | 24152.5 |
| phosphoglucosamine mutase | DWX04_03795 | Not Available | Positive | 926621 - 928009 | 50475.7 |
| glycoside hydrolase family 16 protein | DWX04_03800 | Not Available | Positive | 928100 - 928891 | 30544.4 |
| hypothetical protein | DWX04_03810 | Not Available | Negative | 929788 - 929973 | 7220.3 |
| coproporphyrinogen iii oxidase family protein | DWX04_03815 | Not Available | Negative | 930007 - 931137 | 43502.6 |
| elongation factor g | DWX04_03820 | Not Available | Positive | 931323 - 933482 | 80535.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

