Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative dna modification/repair radical sam protein | DWX04_03570 | Not Available | Positive | 876180 - 877448 | 48564.8 |
| dna metabolism protein | DWX04_03575 | Not Available | Positive | 877445 - 878212 | 30614.9 |
| trna pseudouridine(38-40) synthase trua | DWX04_03580 | Not Available | Negative | 878178 - 878981 | 30885.8 |
| hypothetical protein | DWX04_03585 | Not Available | Negative | 878986 - 879660 | 24792.2 |
| phoh family protein | DWX04_03590 | Not Available | Positive | 879818 - 880822 | 37733.4 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | DWX04_03595 | Not Available | Positive | 880843 - 881787 | 36001.3 |
| demethylmenaquinone methyltransferase | DWX04_03600 | Not Available | Positive | 881880 - 882617 | 27936.8 |
| shikimate dehydrogenase | DWX04_03605 | Not Available | Positive | 882636 - 883376 | 27732.7 |
| alpha/beta hydrolase | DWX04_03610 | Not Available | Positive | 883384 - 884334 | 36584.3 |
| tpm domain-containing protein | DWX04_03615 | Not Available | Positive | 884331 - 885251 | 33344.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

