Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| biosynthetic-type acetolactate synthase large subunit | DWX04_03520 | Not Available | Negative | 861482 - 863179 | 61841.6 |
| dihydroxy-acid dehydratase | DWX04_03525 | Not Available | Negative | 863279 - 865081 | 64117.2 |
| hypothetical protein | DWX04_03530 | Not Available | Negative | 865492 - 865866 | 14035.0 |
| peptidylprolyl isomerase | DWX04_03535 | Not Available | Positive | 866222 - 866800 | 21017.5 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_03540 | Not Available | Negative | 866948 - 868390 | 54928.9 |
| susc/raga family tonb-linked outer membrane protein | DWX04_03545 | Not Available | Negative | 868403 - 871684 | 123334.0 |
| tlpa family protein disulfide reductase | DWX04_03550 | Not Available | Negative | 871714 - 873054 | 51223.8 |
| is1595 family transposase | DWX04_03555 | Not Available | Positive | 873783 - 874709 | 36586.1 |
| hypothetical protein | DWX04_03560 | Not Available | Positive | 875049 - 875546 | 17962.0 |
| hypothetical protein | DWX04_03565 | Not Available | Positive | 875558 - 875929 | 13889.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

