Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoside triphosphate pyrophosphohydrolase | DWX04_03420 | Not Available | Negative | 836468 - 837256 | 30701.6 |
| valine--trna ligase | DWX04_03425 | Not Available | Positive | 837364 - 839991 | 99731.5 |
| hypothetical protein | DWX04_03430 | Not Available | Negative | 840172 - 840612 | 16227.5 |
| sigma-70 family rna polymerase sigma factor | DWX04_03435 | Not Available | Positive | 840759 - 841304 | 21010.2 |
| hypothetical protein | DWX04_03440 | Not Available | Positive | 841301 - 841678 | 14902.8 |
| hypothetical protein | DWX04_03445 | Not Available | Negative | 841753 - 842202 | 17049.0 |
| hypothetical protein | DWX04_03450 | Not Available | Negative | 842273 - 843265 | 37676.2 |
| preprotein translocase subunit seca | DWX04_03455 | Not Available | Negative | 843388 - 846684 | 125101.0 |
| alkaline phosphatase family protein | DWX04_03460 | Not Available | Negative | 846780 - 848363 | 59448.7 |
| duf4105 domain-containing protein | DWX04_03465 | Not Available | Negative | 848360 - 849535 | 45049.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

