Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylmuramic acid 6-phosphate etherase | DWX04_03365 | Not Available | Positive | 824059 - 824895 | 30376.9 |
| simpl domain-containing protein | DWX04_03370 | Not Available | Positive | 824899 - 825600 | 26268.6 |
| hypothetical protein | DWX04_03375 | Not Available | Negative | 825691 - 825930 | 9372.52 |
| 30s ribosomal protein s1 | DWX04_03380 | Not Available | Positive | 826127 - 827923 | 67091.1 |
| cold shock domain-containing protein | DWX04_03385 | Not Available | Positive | 828173 - 828619 | 17045.4 |
| ribonuclease z | DWX04_03390 | Not Available | Positive | 828690 - 829619 | 35255.8 |
| rna polymerase sigma factor | DWX04_03395 | Not Available | Positive | 829653 - 830204 | 21615.8 |
| hypothetical protein | DWX04_03400 | Not Available | Positive | 830249 - 830626 | 14624.4 |
| hypothetical protein | DWX04_03405 | Not Available | Positive | 830638 - 831084 | 17649.5 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_03415 | Not Available | Positive | 834544 - 836274 | 65732.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

