Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| had family hydrolase | DWX04_03260 | Not Available | Negative | 804675 - 805397 | 27108.7 |
| upf0104 family protein | DWX04_03265 | Not Available | Negative | 805402 - 806403 | 37585.2 |
| cdp-alcohol phosphatidyltransferase family protein | DWX04_03270 | Not Available | Negative | 806400 - 807350 | 37209.4 |
| hypothetical protein | DWX04_03275 | Not Available | Negative | 807358 - 808209 | 31795.0 |
| ndp-sugar synthase | DWX04_03280 | Not Available | Negative | 808229 - 808939 | 26297.6 |
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | DWX04_03285 | Not Available | Negative | 808981 - 810081 | 40647.4 |
| duf4837 family protein | DWX04_03290 | Not Available | Negative | 810108 - 811172 | 40606.1 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | DWX04_03295 | Not Available | Negative | 811198 - 812247 | 39554.0 |
| duf4922 domain-containing protein | DWX04_03300 | Not Available | Positive | 812334 - 814805 | 94515.1 |
| spoiid/lytb domain-containing protein | DWX04_03305 | Not Available | Positive | 814862 - 816178 | 49960.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

