Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4847 domain-containing protein | DWX04_03160 | Not Available | Positive | 789132 - 789626 | 18544.7 |
| cmp deaminase | DWX04_03165 | Not Available | Positive | 789631 - 790065 | 16211.4 |
| s41 family peptidase | DWX04_03170 | Not Available | Positive | 790080 - 791828 | 64915.7 |
| 5-formyltetrahydrofolate cyclo-ligase | DWX04_03175 | Not Available | Positive | 791752 - 792282 | 20405.5 |
| duf721 domain-containing protein | DWX04_03180 | Not Available | Negative | 792448 - 792738 | 11221.9 |
| dna replication/repair protein recf | DWX04_03185 | Not Available | Negative | 792735 - 793850 | 42967.7 |
| hypothetical protein | DWX04_03190 | Not Available | Positive | 794003 - 794680 | 24531.2 |
| 6,7-dimethyl-8-ribityllumazine synthase | DWX04_03195 | Not Available | Positive | 794773 - 795279 | 18128.7 |
| Trna-tyr | Not Available | Not Available | Positive | 795391 - 795476 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 795483 - 795558 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

