Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DWX04_02805 | Not Available | Negative | 699249 - 702323 | 113259.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_02810 | Not Available | Negative | 702535 - 703980 | 54470.2 |
| tonb-dependent receptor | DWX04_02815 | Not Available | Negative | 704002 - 707121 | 115348.0 |
| transporter | DWX04_02820 | Not Available | Negative | 707389 - 708987 | 56704.7 |
| beta-galactosidase | DWX04_02825 | Not Available | Negative | 709078 - 713361 | 162424.0 |
| hypothetical protein | DWX04_02830 | Not Available | Positive | 713533 - 713847 | 12303.0 |
| hypothetical protein | DWX04_02835 | Not Available | Positive | 713802 - 714416 | 23675.6 |
| hypothetical protein | DWX04_02840 | Not Available | Negative | 714422 - 717040 | 98587.3 |
| site-specific integrase | DWX04_02845 | Not Available | Positive | 717323 - 718252 | 35831.4 |
| duf3575 domain-containing protein | DWX04_02850 | Not Available | Positive | 718600 - 719166 | 21274.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

