Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| magnesium and cobalt transport protein cora | DWX04_02755 | Not Available | Negative | 681355 - 682395 | 40193.7 |
| transposase | DWX04_02760 | Not Available | Positive | 682446 - 682661 | 8412.27 |
| Trna-lys | Not Available | Not Available | Positive | 682853 - 682928 | Not Available |
| linear amide c-n hydrolase | DWX04_02770 | Not Available | Negative | 683100 - 684179 | 39662.6 |
| hypothetical protein | DWX04_02775 | Not Available | Negative | 684393 - 686624 | 85594.6 |
| sialate o-acetylesterase | DWX04_02780 | Not Available | Negative | 686637 - 688061 | 53405.0 |
| dna-binding protein | DWX04_02785 | Not Available | Negative | 688079 - 691309 | 121396.0 |
| glycoside hydrolase family 2 | DWX04_02790 | Not Available | Negative | 691457 - 694297 | 106110.0 |
| duf4981 domain-containing protein | DWX04_02795 | Not Available | Negative | 694382 - 697594 | 122940.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_02800 | Not Available | Negative | 697724 - 699223 | 55427.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

