Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWX04_02540 | Not Available | Negative | 628529 - 628924 | 15169.6 |
| rna polymerase sigma factor rpod/siga | DWX04_02545 | Not Available | Negative | 629146 - 630006 | 32805.3 |
| do family serine endopeptidase | DWX04_02550 | Not Available | Negative | 630246 - 631769 | 53853.6 |
| duf417 domain-containing protein | DWX04_02555 | Not Available | Negative | 632091 - 632681 | 21267.4 |
| helix-turn-helix domain-containing protein | DWX04_02560 | Not Available | Negative | 632774 - 633610 | 32699.5 |
| hybrid sensor histidine kinase/response regulator | DWX04_02565 | Not Available | Positive | 633948 - 637085 | 119574.0 |
| hypothetical protein | DWX04_02570 | Not Available | Negative | 637548 - 638888 | 49849.6 |
| glycoside hydrolase family 28 protein | DWX04_02575 | Not Available | Negative | 638897 - 640228 | 49474.7 |
| hydrolase | DWX04_02580 | Not Available | Negative | 640295 - 643048 | 104156.0 |
| six-hairpin glycosidase | DWX04_02585 | Not Available | Negative | 643100 - 646411 | 126730.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

