Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DWX04_02490 | Not Available | Negative | 614412 - 617753 | 123052.0 |
| energy-dependent translational throttle protein etta | DWX04_02495 | Not Available | Negative | 618123 - 619811 | 63671.1 |
| mfs transporter | DWX04_02500 | Not Available | Negative | 619849 - 621015 | 43903.9 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | DWX04_02505 | Not Available | Negative | 621030 - 621851 | 29580.9 |
| had family hydrolase | DWX04_02510 | Not Available | Negative | 621904 - 622554 | 24626.3 |
| mate family efflux transporter | DWX04_02515 | Not Available | Positive | 622644 - 623996 | 49414.7 |
| potassium/proton antiporter | DWX04_02520 | Not Available | Positive | 623993 - 625441 | 52867.7 |
| divalent metal cation transporter | DWX04_02525 | Not Available | Negative | 625518 - 626771 | 45774.1 |
| hypothetical protein | DWX04_02530 | Not Available | Positive | 626874 - 627272 | 15058.6 |
| clostripain | DWX04_02535 | Not Available | Negative | 627256 - 628518 | 46710.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

