Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cysteine--trna ligase | DWX04_02440 | Not Available | Negative | 596167 - 597648 | 56276.0 |
| arabinan endo-1,5-alpha-l-arabinosidase | DWX04_02445 | Not Available | Negative | 598023 - 599906 | 70352.2 |
| hypothetical protein | DWX04_02450 | Not Available | Negative | 599980 - 601758 | 64448.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_02455 | Not Available | Negative | 601783 - 603534 | 66225.7 |
| tonb-dependent receptor | DWX04_02460 | Not Available | Negative | 603554 - 606763 | 118787.0 |
| rpn family recombination-promoting nuclease/putative transposase | DWX04_02465 | Not Available | Negative | 607286 - 608143 | 33143.6 |
| endonuclease/exonuclease/phosphatase | DWX04_02470 | Not Available | Negative | 608418 - 609770 | 50822.0 |
| duf5017 domain-containing protein | DWX04_02475 | Not Available | Negative | 609855 - 611162 | 49302.2 |
| tonb-dependent receptor | DWX04_02480 | Not Available | Negative | 611189 - 613936 | 101395.0 |
| hypothetical protein | DWX04_02485 | Not Available | Positive | 614070 - 614396 | 12471.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

