Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DWX04_02135 | Not Available | Negative | 515544 - 518198 | 100786.0 |
| fecr family protein | DWX04_02140 | Not Available | Negative | 518195 - 518998 | 30911.8 |
| rna polymerase sigma-70 factor | DWX04_02145 | Not Available | Negative | 519068 - 519577 | 19967.9 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DWX04_02150 | Not Available | Negative | 519823 - 521526 | 63029.3 |
| susc/raga family tonb-linked outer membrane protein | DWX04_02155 | Not Available | Negative | 521526 - 524567 | 112142.0 |
| rna polymerase sigma-70 factor | DWX04_02160 | Not Available | Positive | 524888 - 525433 | 21382.9 |
| phosphoribosylglycinamide formyltransferase | DWX04_02165 | Not Available | Negative | 525405 - 525983 | 21358.0 |
| acyl carrier protein | DWX04_02170 | Not Available | Positive | 526136 - 526372 | 8382.75 |
| beta-ketoacyl-[acyl-carrier-protein] synthase ii | DWX04_02175 | Not Available | Positive | 526391 - 527656 | 44835.9 |
| ribonuclease 3 | DWX04_02180 | Not Available | Positive | 527659 - 528585 | 35251.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

