Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4861 domain-containing protein | DWX04_01880 | Not Available | Positive | 450037 - 451209 | 42906.5 |
| polysaccharide deacetylase family protein | DWX04_01885 | Not Available | Negative | 451267 - 451878 | 24627.9 |
| duf2723 domain-containing protein | DWX04_01890 | Not Available | Negative | 451949 - 455353 | 129139.0 |
| metal abc transporter atp-binding protein | DWX04_01895 | Not Available | Negative | 455814 - 456581 | 28714.7 |
| zinc abc transporter substrate-binding protein | DWX04_01900 | Not Available | Negative | 456591 - 457496 | 34071.5 |
| helix-turn-helix domain-containing protein | DWX04_01905 | Not Available | Positive | 458171 - 458668 | 19125.2 |
| hypothetical protein | DWX04_01910 | Not Available | Positive | 458726 - 461734 | 110571.0 |
| sam-dependent methyltransferase | DWX04_01915 | Not Available | Negative | 462087 - 462770 | 26029.9 |
| deda family protein | DWX04_01920 | Not Available | Negative | 462775 - 463242 | 17015.3 |
| hypothetical protein | DWX04_01925 | Not Available | Negative | 463218 - 464153 | 35940.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

