Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xre family transcriptional regulator | DWX04_22000 | Not Available | Negative | 5066831 - 5067169 | 12702.8 |
| single-stranded dna-binding protein | DWX04_22005 | Not Available | Negative | 5067339 - 5067716 | 14333.2 |
| hypothetical protein | DWX04_22010 | Not Available | Positive | 5068048 - 5068245 | 7425.87 |
| duf3990 domain-containing protein | DWX04_22015 | Not Available | Negative | 5068590 - 5069072 | 18460.3 |
| duf3791 domain-containing protein | DWX04_22020 | Not Available | Negative | 5069069 - 5069518 | 17822.5 |
| is4 family transposase | DWX04_22025 | Not Available | Positive | 5069955 - 5071118 | 45928.3 |
| duf1273 family protein | DWX04_22030 | Not Available | Negative | 5071312 - 5071926 | 23976.8 |
| phosphoribosyltransferase | DWX04_22035 | Not Available | Negative | 5071928 - 5072494 | 21879.6 |
| rhs repeat protein | DWX04_22040 | Not Available | Positive | 5072594 - 5074570 | 75684.3 |
| hypothetical protein | DWX04_22045 | Not Available | Positive | 5074600 - 5075292 | 27397.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

