Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lactonase family protein | DWX04_21950 | Not Available | Positive | 5049574 - 5050740 | 42758.9 |
| mannose-6-phosphate isomerase | DWX04_21955 | Not Available | Negative | 5050832 - 5051803 | 36186.5 |
| hypothetical protein | DWX04_21960 | Not Available | Negative | 5051917 - 5053494 | 56711.7 |
| tonb-dependent receptor | DWX04_21965 | Not Available | Negative | 5053531 - 5056296 | 104480.0 |
| low specificity l-threonine aldolase | DWX04_21970 | Not Available | Positive | 5056462 - 5057478 | 37858.6 |
| site-specific integrase | DWX04_21975 | Not Available | Negative | 5057542 - 5057822 | 11207.7 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_21980 | Not Available | Negative | 5058003 - 5059628 | 61418.7 |
| susc/raga family tonb-linked outer membrane protein | DWX04_21985 | Not Available | Negative | 5059640 - 5063239 | 133555.0 |
| duf134 domain-containing protein | DWX04_21990 | Not Available | Negative | 5063750 - 5064559 | 29488.5 |
| type ii toxin-antitoxin system hipa family toxin | DWX04_21995 | Not Available | Negative | 5065557 - 5066834 | 48373.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

