Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DWX04_21585 | Not Available | Positive | 4960223 - 4963294 | 113423.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_21590 | Not Available | Positive | 4963320 - 4965008 | 64006.0 |
| l-rhamnose mutarotase | DWX04_21595 | Not Available | Positive | 4965031 - 4965414 | 15469.7 |
| glycoside hydrolase family 97 protein | DWX04_21600 | Not Available | Positive | 4965486 - 4967369 | 71910.4 |
| hypothetical protein | DWX04_21605 | Not Available | Positive | 4967544 - 4967963 | 16028.8 |
| atp-binding protein | DWX04_21615 | Not Available | Positive | 4968527 - 4969849 | 51528.5 |
| hypothetical protein | DWX04_21625 | Not Available | Positive | 4971246 - 4972859 | 60816.2 |
| hypothetical protein | DWX04_21630 | Not Available | Negative | 4972987 - 4974303 | 47511.9 |
| fimbrillin family protein | DWX04_21635 | Not Available | Negative | 4974300 - 4975295 | 37275.4 |
| aaa family atpase | DWX04_21640 | Not Available | Negative | 4975593 - 4977203 | 62418.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

