Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l13 | DWX04_21370 | Not Available | Negative | 4920422 - 4920883 | 17129.7 |
| hypothetical protein | DWX04_21375 | Not Available | Negative | 4921183 - 4921428 | 9041.7 |
| zeta toxin | DWX04_21380 | Not Available | Negative | 4921418 - 4921993 | 21483.9 |
| duf4488 domain-containing protein | DWX04_21385 | Not Available | Negative | 4922349 - 4922843 | 18600.8 |
| asparagine--trna ligase | DWX04_21390 | Not Available | Negative | 4923006 - 4924409 | 53432.1 |
| pseudouridine synthase | DWX04_21395 | Not Available | Negative | 4924432 - 4925898 | 56182.9 |
| adenylosuccinate lyase | DWX04_21400 | Not Available | Negative | 4925974 - 4927320 | 50932.1 |
| mate family efflux transporter | DWX04_21405 | Not Available | Negative | 4927414 - 4928763 | 49693.5 |
| aminopeptidase | DWX04_21410 | Not Available | Positive | 4928926 - 4930419 | 55015.9 |
| gntr family transcriptional regulator | DWX04_21415 | Not Available | Negative | 4930517 - 4930882 | 14354.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

