Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWX04_01730 | Not Available | Positive | 396167 - 396355 | 6806.25 |
| stas domain-containing protein | DWX04_01735 | Not Available | Negative | 396545 - 398227 | 60541.7 |
| duf4884 domain-containing protein | DWX04_01740 | Not Available | Negative | 398326 - 398595 | 10182.1 |
| rubrerythrin family protein | DWX04_01745 | Not Available | Positive | 398776 - 399354 | 21626.4 |
| hybrid sensor histidine kinase/response regulator | DWX04_01750 | Not Available | Negative | 399448 - 403434 | 150460.0 |
| hypothetical protein | DWX04_01755 | Not Available | Negative | 403575 - 406931 | 126653.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_01760 | Not Available | Negative | 407071 - 408690 | 61287.8 |
| tonb-dependent receptor | DWX04_01765 | Not Available | Negative | 408717 - 411761 | 114150.0 |
| glycoside hydrolase family 127 protein | DWX04_01770 | Not Available | Negative | 411796 - 414231 | 91078.9 |
| invertase | DWX04_01775 | Not Available | Positive | 414610 - 415221 | 23063.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

