Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DWX04_21040 | Not Available | Positive | 4860099 - 4863320 | 118829.0 |
| recombinase family protein | DWX04_21045 | Not Available | Positive | 4863393 - 4864087 | 26026.3 |
| hypothetical protein | DWX04_21050 | Not Available | Positive | 4864224 - 4864973 | 29067.1 |
| hypothetical protein | DWX04_21065 | Not Available | Positive | 4866185 - 4867462 | 47762.7 |
| xre family transcriptional regulator | DWX04_21070 | Not Available | Positive | 4867541 - 4868065 | 20955.5 |
| nucleotidyl transferase abieii/abigii toxin family protein | DWX04_21075 | Not Available | Positive | 4868062 - 4868961 | 34249.8 |
| hypothetical protein | DWX04_21080 | Not Available | Positive | 4869677 - 4869949 | 9839.54 |
| hypothetical protein | DWX04_21085 | Not Available | Negative | 4870032 - 4870475 | 16305.7 |
| hypothetical protein | DWX04_21090 | Not Available | Negative | 4870822 - 4871058 | 9310.18 |
| hypothetical protein | DWX04_21095 | Not Available | Negative | 4871181 - 4871381 | 7449.15 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

