Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-54-dependent fis family transcriptional regulator | DWX04_20780 | Not Available | Positive | 4809643 - 4810962 | 49928.9 |
| duf3945 domain-containing protein | DWX04_20785 | Not Available | Positive | 4811576 - 4813414 | 69740.5 |
| duf4099 domain-containing protein | DWX04_20790 | Not Available | Positive | 4813469 - 4813744 | 10041.2 |
| dna topoisomerase iii | DWX04_20795 | Not Available | Positive | 4813817 - 4815589 | 66283.9 |
| hypothetical protein | DWX04_20800 | Not Available | Positive | 4815886 - 4816098 | 7847.55 |
| hypothetical protein | DWX04_20805 | Not Available | Positive | 4816117 - 4816326 | 7906.5 |
| prtrc system protein e | DWX04_20810 | Not Available | Positive | 4816346 - 4817320 | 36206.0 |
| prtrc system protein c | DWX04_20815 | Not Available | Positive | 4817342 - 4817563 | 8359.96 |
| hypothetical protein | DWX04_20820 | Not Available | Positive | 4817598 - 4818707 | 43325.3 |
| is66 family insertion sequence hypothetical protein | DWX04_20825 | Not Available | Positive | 4818766 - 4818999 | 8993.16 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

