Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin | DWX04_20680 | Not Available | Negative | 4789749 - 4790045 | 11304.9 |
| omph family outer membrane protein | DWX04_20685 | Not Available | Negative | 4790164 - 4790778 | 23085.3 |
| hypothetical protein | DWX04_20690 | Not Available | Negative | 4790801 - 4791028 | 8180.13 |
| aminoacyl-histidine dipeptidase | DWX04_20695 | Not Available | Positive | 4791250 - 4792707 | 53150.6 |
| endonuclease | DWX04_20700 | Not Available | Positive | 4792713 - 4793723 | 38170.7 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | DWX04_20705 | Not Available | Negative | 4793800 - 4794273 | 18355.5 |
| carboxylating nicotinate-nucleotide diphosphorylase | DWX04_20710 | Not Available | Positive | 4794354 - 4795205 | 31273.2 |
| rhs repeat protein | DWX04_20715 | Not Available | Positive | 4795382 - 4797232 | 71301.6 |
| hypothetical protein | DWX04_20720 | Not Available | Positive | 4797256 - 4797534 | 10848.1 |
| hypothetical protein | DWX04_20725 | Not Available | Negative | 4797591 - 4797782 | 7462.09 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

