Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| leucine--trna ligase | DWX04_01680 | Not Available | Positive | 381934 - 384768 | 108279.0 |
| yitt family protein | DWX04_01685 | Not Available | Positive | 384850 - 385746 | 33203.3 |
| n-acetyltransferase | DWX04_01690 | Not Available | Negative | 385845 - 386372 | 20773.7 |
| non-canonical purine ntp diphosphatase | DWX04_01695 | Not Available | Positive | 386532 - 387113 | 21352.7 |
| quinolinate synthase nada | DWX04_01700 | Not Available | Negative | 387368 - 388360 | 36624.0 |
| tonb-dependent receptor | DWX04_01705 | Not Available | Negative | 388463 - 390781 | 88565.0 |
| trmh family rna methyltransferase | DWX04_01710 | Not Available | Positive | 391504 - 392040 | 19963.2 |
| duf4294 domain-containing protein | DWX04_01715 | Not Available | Negative | 392071 - 392643 | 22062.0 |
| helix-hairpin-helix domain-containing protein | DWX04_01720 | Not Available | Positive | 392740 - 394812 | 81316.2 |
| radical sam protein | DWX04_01725 | Not Available | Positive | 394858 - 395634 | 29363.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

