Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr00341 family protein | DWX04_20205 | Not Available | Negative | 4712467 - 4713831 | 50535.2 |
| lipopolysaccharide biosynthesis protein | DWX04_20210 | Not Available | Negative | 4713834 - 4715279 | 54344.9 |
| holliday junction branch migration dna helicase ruvb | DWX04_20215 | Not Available | Negative | 4715283 - 4716311 | 38022.6 |
| site-specific integrase | DWX04_20220 | Not Available | Positive | 4716438 - 4717556 | 43297.0 |
| hypothetical protein | DWX04_20225 | Not Available | Positive | 4717678 - 4717886 | 7711.15 |
| hypothetical protein | DWX04_20230 | Not Available | Positive | 4717889 - 4719238 | 53096.4 |
| dna methylase n-4 | DWX04_20235 | Not Available | Positive | 4719238 - 4721754 | 97042.9 |
| hypothetical protein | DWX04_20240 | Not Available | Positive | 4721751 - 4722068 | 12242.9 |
| hypothetical protein | DWX04_20245 | Not Available | Positive | 4722081 - 4722266 | 6892.58 |
| hypothetical protein | DWX04_20250 | Not Available | Positive | 4722269 - 4723075 | 31623.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

