Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional riboflavin kinase/fad synthetase | DWX04_20150 | Not Available | Positive | 4703055 - 4703975 | 35285.5 |
| duf3836 domain-containing protein | DWX04_20160 | Not Available | Positive | 4704354 - 4704773 | 16015.9 |
| hypothetical protein | DWX04_20165 | Not Available | Positive | 4704773 - 4705072 | 11054.1 |
| cpbp family intramembrane metalloprotease | DWX04_20170 | Not Available | Positive | 4705245 - 4706075 | 30285.8 |
| duf2975 domain-containing protein | DWX04_20175 | Not Available | Positive | 4706084 - 4706731 | 23980.7 |
| duf2975 domain-containing protein | DWX04_20180 | Not Available | Positive | 4706748 - 4707395 | 24199.5 |
| hypothetical protein | DWX04_20185 | Not Available | Positive | 4707406 - 4707663 | 10168.7 |
| transcriptional regulator | DWX04_20190 | Not Available | Positive | 4707667 - 4707879 | 7789.65 |
| atp-dependent rna helicase | DWX04_20195 | Not Available | Positive | 4708141 - 4710015 | 70716.0 |
| s46 family peptidase | DWX04_20200 | Not Available | Negative | 4710336 - 4712462 | 80074.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

