Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin | DWX04_20100 | Not Available | Negative | 4695051 - 4695530 | 17688.5 |
| hypothetical protein | DWX04_20105 | Not Available | Negative | 4695533 - 4695751 | 8004.92 |
| hypothetical protein | DWX04_20110 | Not Available | Negative | 4695956 - 4696204 | 9283.76 |
| hypothetical protein | DWX04_20115 | Not Available | Positive | 4696384 - 4697031 | 24488.9 |
| hypothetical protein | DWX04_20120 | Not Available | Positive | 4697044 - 4697541 | 18681.7 |
| glycosyl hydrolase family 88 | DWX04_20125 | Not Available | Negative | 4697598 - 4698896 | 49888.6 |
| hypothetical protein | DWX04_20130 | Not Available | Positive | 4699238 - 4699441 | 7696.4 |
| Trna-met | Not Available | Not Available | Positive | 4699551 - 4699627 | Not Available |
| calcium-translocating p-type atpase, pmca-type | DWX04_20140 | Not Available | Positive | 4699783 - 4702413 | 97082.8 |
| had family phosphatase | DWX04_20145 | Not Available | Positive | 4702441 - 4703055 | 24088.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

