Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWX04_19775 | Not Available | Positive | 4644746 - 4645252 | 19585.0 |
| hypothetical protein | DWX04_19780 | Not Available | Positive | 4645520 - 4646029 | 18248.9 |
| type ii toxin-antitoxin system hipa family toxin | DWX04_19790 | Not Available | Negative | 4646443 - 4647969 | 58020.2 |
| xre family transcriptional regulator | DWX04_19795 | Not Available | Negative | 4647959 - 4648279 | 12315.2 |
| type ii toxin-antitoxin system hipa family toxin | DWX04_19800 | Not Available | Negative | 4648379 - 4649968 | 60670.4 |
| helix-turn-helix domain-containing protein | DWX04_19805 | Not Available | Negative | 4649961 - 4650311 | 13369.6 |
| atp-binding protein | DWX04_19815 | Not Available | Positive | 4650727 - 4652007 | 49138.9 |
| luxr family transcriptional regulator | DWX04_19820 | Not Available | Negative | 4652313 - 4653374 | 40925.6 |
| duf3575 domain-containing protein | DWX04_19825 | Not Available | Positive | 4653676 - 4654908 | 47170.1 |
| duf5119 domain-containing protein | DWX04_19830 | Not Available | Positive | 4654905 - 4655825 | 34174.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

