Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-galactosidase | DWX04_19615 | Not Available | Positive | 4605405 - 4607012 | 60443.3 |
| dna-binding response regulator | DWX04_19620 | Not Available | Positive | 4607063 - 4607833 | 29532.6 |
| phosphoglycerate mutase family protein | DWX04_19625 | Not Available | Negative | 4607851 - 4608435 | 22907.3 |
| hypothetical protein | DWX04_19635 | Not Available | Negative | 4609977 - 4610816 | 32293.0 |
| leucyl/phenylalanyl-trna--protein transferase | DWX04_19640 | Not Available | Negative | 4610957 - 4611610 | 24968.2 |
| aaa family atpase | DWX04_19645 | Not Available | Negative | 4611706 - 4613934 | 83031.5 |
| atp-dependent clp protease adaptor clps | DWX04_19650 | Not Available | Negative | 4613952 - 4614260 | 12034.5 |
| general stress protein | DWX04_19655 | Not Available | Negative | 4614489 - 4614896 | 15299.3 |
| arac family transcriptional regulator | DWX04_19660 | Not Available | Negative | 4614970 - 4615785 | 31074.5 |
| hypothetical protein | DWX04_19665 | Not Available | Negative | 4615794 - 4616480 | 25460.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

