Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| saccharopine dehydrogenase family protein | DWX04_19565 | Not Available | Positive | 4592718 - 4593911 | 44966.5 |
| thioredoxin-dependent thiol peroxidase | DWX04_19570 | Not Available | Positive | 4593979 - 4594425 | 16924.4 |
| recombinase reca | DWX04_19575 | Not Available | Positive | 4594438 - 4595481 | 37366.7 |
| duf4923 family protein | DWX04_19580 | Not Available | Negative | 4595555 - 4596151 | 21273.9 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_19585 | Not Available | Negative | 4596357 - 4598072 | 63842.8 |
| tonb-dependent receptor | DWX04_19590 | Not Available | Negative | 4598086 - 4601124 | 110997.0 |
| helix-turn-helix domain-containing protein | DWX04_19595 | Not Available | Positive | 4601367 - 4604168 | 106882.0 |
| hypothetical protein | DWX04_19600 | Not Available | Positive | 4604195 - 4604539 | 12986.3 |
| Trna-phe | Not Available | Not Available | Positive | 4604795 - 4604870 | Not Available |
| Trna-pro | Not Available | Not Available | Positive | 4605051 - 4605123 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

