Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell filamentation protein fic | DWX04_19460 | Not Available | Negative | 4564396 - 4565394 | 38471.0 |
| type ii crispr rna-guided endonuclease cas9 | DWX04_19465 | Not Available | Negative | 4565409 - 4569923 | 176041.0 |
| clc family h(+)/cl(-) exchange transporter | DWX04_19470 | Not Available | Negative | 4570108 - 4571706 | 59712.1 |
| marr family transcriptional regulator | DWX04_19475 | Not Available | Negative | 4571739 - 4572068 | 12241.0 |
| pyridine nucleotide-disulfide oxidoreductase | DWX04_19480 | Not Available | Negative | 4572102 - 4574603 | 90728.8 |
| mate family efflux transporter | DWX04_19485 | Not Available | Positive | 4574840 - 4576189 | 49603.2 |
| hotdog fold thioesterase | DWX04_19490 | Not Available | Positive | 4576281 - 4576688 | 14518.5 |
| isochorismate synthase | DWX04_19495 | Not Available | Positive | 4576685 - 4577827 | 43213.4 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | DWX04_19500 | Not Available | Positive | 4577854 - 4579527 | 62975.0 |
| 1,4-dihydroxy-2-naphthoyl-coa synthase | DWX04_19505 | Not Available | Positive | 4579527 - 4580348 | 30387.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

