Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DWX04_19145 | Not Available | Negative | 4490255 - 4491703 | 54497.3 |
| susc/raga family tonb-linked outer membrane protein | DWX04_19150 | Not Available | Negative | 4491723 - 4495076 | 125043.0 |
| fecr family protein | DWX04_19155 | Not Available | Negative | 4495092 - 4496261 | 44531.5 |
| rna polymerase sigma-70 factor | DWX04_19160 | Not Available | Negative | 4496365 - 4496916 | 21576.8 |
| endonuclease muts2 | DWX04_19165 | Not Available | Negative | 4496996 - 4499500 | 95112.5 |
| Trna-ser | Not Available | Not Available | Positive | 4499647 - 4499734 | Not Available |
| helicase iv | DWX04_19175 | Not Available | Negative | 4499892 - 4502507 | 100859.0 |
| hypothetical protein | DWX04_19180 | Not Available | Negative | 4502575 - 4503234 | 25073.6 |
| hypothetical protein | DWX04_19185 | Not Available | Negative | 4503254 - 4503751 | 18084.0 |
| mobilization protein | DWX04_19195 | Not Available | Negative | 4504058 - 4505461 | 54524.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

