Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DWX04_19040 | Not Available | Positive | 4464832 - 4468248 | 125439.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DWX04_19045 | Not Available | Positive | 4468267 - 4469880 | 60294.1 |
| dicarboxylate/amino acid:cation symporter | DWX04_19050 | Not Available | Positive | 4470116 - 4471297 | 42233.4 |
| hypothetical protein | DWX04_19055 | Not Available | Positive | 4471407 - 4472900 | 56045.8 |
| hypothetical protein | DWX04_19060 | Not Available | Positive | 4472912 - 4473472 | 21317.7 |
| hypothetical protein | DWX04_19065 | Not Available | Negative | 4473668 - 4474249 | 22794.8 |
| ktsc domain-containing protein | DWX04_19070 | Not Available | Negative | 4474314 - 4474499 | 7242.59 |
| diacylglucosamine hydrolase | DWX04_19075 | Not Available | Positive | 4474915 - 4475505 | 22791.2 |
| transposase | DWX04_19085 | Not Available | Positive | 4476200 - 4476469 | 10401.3 |
| Trna-glu | Not Available | Not Available | Positive | 4476590 - 4476664 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

