Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal recognition particle protein | DWX04_18990 | Not Available | Negative | 4450992 - 4452314 | 48854.7 |
| mate family efflux transporter | DWX04_18995 | Not Available | Negative | 4452413 - 4453735 | 48738.4 |
| hypothetical protein | DWX04_19000 | Not Available | Positive | 4454075 - 4455430 | 48782.8 |
| rna polymerase sigma-70 factor | DWX04_19005 | Not Available | Negative | 4455489 - 4456049 | 21971.5 |
| duf5009 domain-containing protein | DWX04_19010 | Not Available | Negative | 4456074 - 4457165 | 40508.7 |
| beta-hexosaminidase | DWX04_19015 | Not Available | Positive | 4457366 - 4459789 | 90972.5 |
| gamma-carboxymuconolactone decarboxylase | DWX04_19020 | Not Available | Positive | 4460023 - 4460853 | 31089.9 |
| hypothetical protein | DWX04_19025 | Not Available | Positive | 4460988 - 4462202 | 45665.3 |
| phosphoglycerate kinase | DWX04_19030 | Not Available | Negative | 4462277 - 4463530 | 44034.9 |
| fecr family protein | DWX04_19035 | Not Available | Positive | 4463754 - 4464680 | 35762.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

