Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amidinotransferase | DWX04_18890 | Not Available | Negative | 4427359 - 4428270 | 34243.8 |
| amidinotransferase | DWX04_18895 | Not Available | Negative | 4428293 - 4429213 | 35512.7 |
| endonuclease iii | DWX04_18900 | Not Available | Positive | 4429331 - 4429975 | 24101.6 |
| mbl fold metallo-hydrolase | DWX04_18905 | Not Available | Negative | 4429970 - 4430746 | 29140.4 |
| udp-n-acetylmuramate dehydrogenase | DWX04_18910 | Not Available | Negative | 4430755 - 4431768 | 37569.1 |
| duf4348 domain-containing protein | DWX04_18915 | Not Available | Negative | 4431780 - 4432640 | 33508.7 |
| phenylalanine--trna ligase subunit alpha | DWX04_18920 | Not Available | Positive | 4432752 - 4433786 | 38981.6 |
| mfs transporter | DWX04_18925 | Not Available | Positive | 4433914 - 4435110 | 43902.7 |
| hypothetical protein | DWX04_18930 | Not Available | Negative | 4435107 - 4436249 | 43009.4 |
| 4-amino-4-deoxychorismate lyase | DWX04_18935 | Not Available | Negative | 4436339 - 4436932 | 22692.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

