Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3316 domain-containing protein | DWX04_18840 | Not Available | Positive | 4418940 - 4419785 | 31956.1 |
| peptidase s41 | DWX04_18845 | Not Available | Positive | 4419794 - 4420822 | 39153.0 |
| Trna-leu | Not Available | Not Available | Positive | 4420891 - 4420975 | Not Available |
| duf5110 domain-containing protein | DWX04_18855 | Not Available | Negative | 4421072 - 4423207 | 81599.4 |
| hypothetical protein | DWX04_18860 | Not Available | Positive | 4423208 - 4423477 | 10443.1 |
| Trna-ser | Not Available | Not Available | Positive | 4423489 - 4423579 | Not Available |
| nadph-dependent 7-cyano-7-deazaguanine reductase quef | DWX04_18870 | Not Available | Negative | 4423667 - 4424122 | 17765.2 |
| 7-cyano-7-deazaguanine synthase quec | DWX04_18875 | Not Available | Negative | 4424341 - 4425012 | 24891.9 |
| vut family protein | DWX04_18880 | Not Available | Negative | 4425133 - 4425819 | 25069.6 |
| ornithine--oxo-acid transaminase | DWX04_18885 | Not Available | Negative | 4426109 - 4427344 | 45587.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

