Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gntr family transcriptional regulator | DWX04_18790 | Not Available | Negative | 4405370 - 4406203 | 31856.5 |
| iron-containing alcohol dehydrogenase | DWX04_18795 | Not Available | Positive | 4406280 - 4407674 | 51593.0 |
| hypothetical protein | DWX04_18800 | Not Available | Positive | 4407757 - 4408710 | 35226.7 |
| abc transporter atp-binding protein | DWX04_18805 | Not Available | Negative | 4408722 - 4409381 | 23931.2 |
| trna threonylcarbamoyladenosine dehydratase | DWX04_18810 | Not Available | Negative | 4409384 - 4410106 | 27062.2 |
| cation:proton antiporter | DWX04_18815 | Not Available | Negative | 4410093 - 4412240 | 80167.6 |
| aspartate-semialdehyde dehydrogenase | DWX04_18820 | Not Available | Positive | 4412407 - 4413417 | 37267.8 |
| peptidylprolyl isomerase | DWX04_18825 | Not Available | Negative | 4413898 - 4414539 | 23289.7 |
| glycine--trna ligase | DWX04_18830 | Not Available | Negative | 4414550 - 4416091 | 59436.0 |
| dna gyrase/topoisomerase iv subunit a | DWX04_18835 | Not Available | Positive | 4416243 - 4418936 | 102634.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

