Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta hydrolase | DWX04_18640 | Not Available | Positive | 4361570 - 4362415 | 30946.9 |
| ferritin | DWX04_18645 | Not Available | Negative | 4362863 - 4363345 | 17905.2 |
| 30s ribosomal protein s16 | DWX04_18650 | Not Available | Positive | 4363552 - 4364103 | 19788.4 |
| susc/raga family tonb-linked outer membrane protein | DWX04_18655 | Not Available | Positive | 4364149 - 4366940 | 102287.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_18660 | Not Available | Positive | 4366972 - 4369110 | 79403.8 |
| hypothetical protein | DWX04_18665 | Not Available | Positive | 4369200 - 4369517 | 12135.9 |
| alpha-l-rhamnosidase | DWX04_18670 | Not Available | Positive | 4369763 - 4371544 | 66691.4 |
| silent information regulator protein sir2 | DWX04_18675 | Not Available | Positive | 4371588 - 4373438 | 69329.7 |
| glycoside hydrolase | DWX04_18680 | Not Available | Positive | 4373552 - 4376839 | 122957.0 |
| glycoside hydrolase family 88 protein | DWX04_18685 | Not Available | Positive | 4376980 - 4378113 | 43912.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

