Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenosylmethionine--8-amino-7-oxononanoate transaminase | DWX04_18540 | Not Available | Negative | 4338660 - 4339931 | 47784.3 |
| biotin synthase biob | DWX04_18545 | Not Available | Negative | 4339970 - 4340929 | 35602.0 |
| hypothetical protein | DWX04_18550 | Not Available | Negative | 4340942 - 4341307 | 13987.2 |
| alpha-amylase | DWX04_18555 | Not Available | Negative | 4341460 - 4342854 | 53209.7 |
| glycosyltransferase family 1 protein | DWX04_18560 | Not Available | Negative | 4342873 - 4344138 | 47628.2 |
| 4-alpha-glucanotransferase | DWX04_18565 | Not Available | Negative | 4344153 - 4346093 | 74862.2 |
| rhomboid family intramembrane serine protease | DWX04_18570 | Not Available | Positive | 4346274 - 4346939 | 25210.0 |
| formate-dependent phosphoribosylglycinamide formyltransferase | DWX04_18575 | Not Available | Negative | 4347422 - 4348591 | 42895.6 |
| pspc domain-containing protein | DWX04_18580 | Not Available | Negative | 4348689 - 4349735 | 38246.6 |
| padr family transcriptional regulator | DWX04_18585 | Not Available | Negative | 4349748 - 4350074 | 12456.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

