Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | DWX04_18275 | Not Available | Positive | 4262198 - 4264987 | 106023.0 |
| aldehyde dehydrogenase | DWX04_18280 | Not Available | Positive | 4265198 - 4266634 | 52569.2 |
| glycoside hydrolase family 88 protein | DWX04_18285 | Not Available | Negative | 4266841 - 4268247 | 53427.8 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_18290 | Not Available | Negative | 4268313 - 4270313 | 74581.2 |
| tonb-dependent receptor | DWX04_18295 | Not Available | Negative | 4270338 - 4273508 | 118006.0 |
| response regulator | DWX04_18300 | Not Available | Positive | 4273763 - 4278040 | 163380.0 |
| arabinosidase | DWX04_18305 | Not Available | Positive | 4278155 - 4279159 | 38230.8 |
| duf4038 domain-containing protein | DWX04_18310 | Not Available | Positive | 4279229 - 4280695 | 55623.9 |
| hypothetical protein | DWX04_18315 | Not Available | Positive | 4280792 - 4281532 | 28001.5 |
| dna helicase | DWX04_18320 | Not Available | Positive | 4281554 - 4284880 | 128279.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

