Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DWX04_18215 | Not Available | Negative | 4243082 - 4246447 | 124292.0 |
| fecr family protein | DWX04_18220 | Not Available | Negative | 4246701 - 4247714 | 38548.0 |
| rna polymerase sigma-70 factor | DWX04_18225 | Not Available | Positive | 4247858 - 4248424 | 22251.9 |
| dna-binding protein | DWX04_18230 | Not Available | Negative | 4248617 - 4249297 | 26000.2 |
| rna polymerase sigma-70 factor | DWX04_18245 | Not Available | Positive | 4251510 - 4252097 | 22864.5 |
| duf4974 domain-containing protein | DWX04_18250 | Not Available | Positive | 4252216 - 4253160 | 35905.3 |
| susc/raga family tonb-linked outer membrane protein | DWX04_18255 | Not Available | Positive | 4253314 - 4256670 | 124944.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX04_18260 | Not Available | Positive | 4256683 - 4258236 | 58645.6 |
| glycoside hydrolase | DWX04_18265 | Not Available | Positive | 4258328 - 4260412 | 78424.4 |
| beta-xylosidase | DWX04_18270 | Not Available | Positive | 4260431 - 4262023 | 61025.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

