Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetyltransferase | DWX04_18060 | Not Available | Positive | 4208745 - 4209200 | 17391.2 |
| class i sam-dependent methyltransferase | DWX04_18065 | Not Available | Positive | 4209472 - 4210260 | 29804.4 |
| nudix hydrolase | DWX04_18070 | Not Available | Negative | 4210367 - 4210921 | 21545.7 |
| duf5131 family protein | DWX04_18075 | Not Available | Positive | 4211135 - 4211902 | 29840.6 |
| sensor protein kdpd | DWX04_18080 | Not Available | Positive | 4212082 - 4213209 | 42638.1 |
| pas domain-containing sensor histidine kinase | DWX04_18085 | Not Available | Positive | 4213222 - 4214691 | 55121.1 |
| methyltransferase | DWX04_18090 | Not Available | Negative | 4214762 - 4215430 | 24548.2 |
| dna recombination protein rmuc | DWX04_18095 | Not Available | Negative | 4215448 - 4216683 | 46988.8 |
| cof-type had-iib family hydrolase | DWX04_18100 | Not Available | Positive | 4216779 - 4217585 | 30316.9 |
| ferredoxin | DWX04_18105 | Not Available | Negative | 4217575 - 4218105 | 19120.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

