Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna resolvase | DWX04_17495 | Not Available | Negative | 4075086 - 4075727 | 24315.7 |
| hypothetical protein | DWX04_17500 | Not Available | Negative | 4075957 - 4076433 | 18229.0 |
| sigma-70 family rna polymerase sigma factor | DWX04_17505 | Not Available | Negative | 4076453 - 4077088 | 25584.4 |
| duf3871 family protein | DWX04_17510 | Not Available | Negative | 4077181 - 4078218 | 39702.6 |
| hypothetical protein | DWX04_17515 | Not Available | Negative | 4078378 - 4078560 | 6091.37 |
| hypothetical protein | DWX04_17520 | Not Available | Negative | 4079013 - 4080827 | 69709.7 |
| hypoxanthine phosphoribosyltransferase | DWX04_17525 | Not Available | Positive | 4080991 - 4081527 | 20092.5 |
| adenylate kinase | DWX04_17530 | Not Available | Positive | 4081568 - 4082137 | 20827.2 |
| gtpase obge | DWX04_17535 | Not Available | Positive | 4082253 - 4083437 | 44180.3 |
| peptidoglycan editing factor pgef | DWX04_17540 | Not Available | Positive | 4083434 - 4084216 | 28811.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

