Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DWX04_17335 | Not Available | Positive | 4034646 - 4036964 | 86937.6 |
| duf4980 domain-containing protein | DWX04_17340 | Not Available | Positive | 4037113 - 4038996 | 70923.2 |
| mfs transporter | DWX04_17345 | Not Available | Positive | 4039012 - 4040172 | 41844.0 |
| carbohydrate kinase | DWX04_17350 | Not Available | Positive | 4040200 - 4041087 | 32432.2 |
| response regulator | DWX04_17355 | Not Available | Positive | 4041283 - 4044009 | 102878.0 |
| amino acid-binding protein | DWX04_17360 | Not Available | Negative | 4044052 - 4044480 | 15643.0 |
| phenylacetate--coa ligase | DWX04_17365 | Not Available | Negative | 4044492 - 4045790 | 49214.5 |
| duf3256 family protein | DWX04_17370 | Not Available | Positive | 4045904 - 4046551 | 24349.6 |
| 50s ribosomal protein l31 type b | DWX04_17375 | Not Available | Negative | 4046636 - 4046890 | 9656.59 |
| class ii fructose-1,6-bisphosphate aldolase | DWX04_17380 | Not Available | Positive | 4047222 - 4048226 | 36460.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

