Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF18-14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF18-14 AF18-14.Scaf84, whole genome
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rip metalloprotease rsep | DWX04_17285 | Not Available | Positive | 4022751 - 4024094 | 50887.1 |
| anaerobic ribonucleoside-triphosphate reductase activating protein | DWX04_17290 | Not Available | Negative | 4024669 - 4025127 | 17410.7 |
| anaerobic ribonucleoside triphosphate reductase | DWX04_17295 | Not Available | Negative | 4025133 - 4027409 | 86287.2 |
| hemolysin iii | DWX04_17300 | Not Available | Negative | 4027704 - 4028339 | 23650.2 |
| hd domain-containing protein | DWX04_17305 | Not Available | Negative | 4028344 - 4029846 | 57544.8 |
| hypothetical protein | DWX04_17310 | Not Available | Positive | 4029864 - 4030688 | 30806.1 |
| holliday junction branch migration protein ruva | DWX04_17315 | Not Available | Negative | 4030776 - 4031369 | 21141.8 |
| diaminopimelate dehydrogenase | DWX04_17320 | Not Available | Positive | 4031545 - 4032444 | 32247.9 |
| prolipoprotein diacylglyceryl transferase | DWX04_17325 | Not Available | Positive | 4032551 - 4033357 | 31284.6 |
| dna-binding protein | DWX04_17330 | Not Available | Negative | 4033399 - 4034010 | 23005.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

